@article{Wiechens:25,

title = {Gene regulation by convergent promoters},

author = {Elina Wiechens and Flavia Vigliotti and Kanstantsin Siniuk and Robert Schwarz and Katjana Schwab and Konstantin Riege and Alena Bömmel and Ivonne Görlich and Martin Bens and Arne Sahm and Marco Groth and Morgan A Sammons and Alexander Loewer and Steve Hoffmann and Martin Fischer},

url = {https://pubmed.ncbi.nlm.nih.gov/39779959/},

doi = {10.1038/s41588-024-02025-w},

year  = {2025},

date = {2025-01-01},

urldate = {2025-01-01},

journal = {Nat Genet},

volume = {57},

number = {1},

issue = {1},

pages = {206-217},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Hofmann:24,

title = {Distinct negative-sense RNA viruses induce a common set of transcripts encoding proteins forming an extensive network.},

author = {Nina Hofmann and Marek Bartkuhn and Stephan Becker and Nadine Biedenkopf and Eva Böttcher-Friebertshäuser and Karina Brinkrolf and Erik Dietzel and Sarah Katharina Fehling and Alexander Goesmann and Miriam Ruth Heindl and Simone Hoffmann and Nadja Karl and Andrea Maisner and Ahmed Mostafa and Laura Kornecki and Helena Müller-Kräuter and Christin Müller-Ruttloff and Andrea Nist and Stephan Pleschka and Lucie Sauerhering and Thorsten Stiewe and Thomas Strecker and Jochen Wilhelm and Jennifer D. Wuerth and John Ziebuhr and Friedemann Weber and M. Lienhard Schmitz},

url = {https://pubmed.ncbi.nlm.nih.gov/39283124/},

doi = {10.1128/jvi.00935-24},

year  = {2024},

date = {2024-10-01},

urldate = {2024-10-01},

journal = {J Virol},

volume = {98},

number = {10},

issue = {10},

pages = {e0093524},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Olecka:24,

title = {Nonlinear DNA methylation trajectories in aging male mice},

author = {Maja Olecka and Alena Bömmel and Lena Best and Madlen Haase and Silke Foerste and Konstantin Riege and Thomas Dost and Stefano Flor and Otto W Witte and Sören Franzenburg and Marco Groth and Björn Eyss and Christoph Kaleta and Christiane Frahm and Steve Hoffmann},

url = {https://pubmed.ncbi.nlm.nih.gov/38594255/},

doi = {10.1038/s41467-024-47316-2},

issn = {2041-1723 (Electronic) 

 2041-1723 (Linking)},

year  = {2024},

date = {2024-04-01},

journal = {Nat Commun},

volume = {15},

number = {1},

issue = {1},

pages = {3074},

keywords = {},

pubstate = {epublish},

tppubtype = {article}

}

@article{Schwarz:22,

title = {Locus-specific expression analysis of transposable elements.},

author = {Robert Schwarz and Philipp Koch and Jeanne Wilbrandt and Steve Hoffmann},

doi = {10.1093/bib/bbab417},

issn = {1477-4054},

year  = {2022},

date = {2022-01-01},

journal = {Brief Bioinform},

volume = {23},

issue = {1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Schoen:20,

title = {Elongin C contributes to RNA polymerase II degradation by the interferon antagonist NSs of La Crosse Orthobunyavirus},

author = {Andreas Schoen and Simone Lau and Paul Verbruggen and Friedemann Weber},

doi = {10.1128/JVI.02134-19},

year  = {2020},

date = {2020-01-01},

journal = {J Virol},

volume = {94},

issue = {7},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Hoelzer:19:bats,

title = {Virus- and interferon alpha-induced transcriptomes of cells from the microbat emphMyotis daubentonii},

author = {Martin Hölzer and Andreas Schoen and Julia Wulle and Marcel A Müller and Christian Drosten and Manja Marz and Friedemann Weber},

url = {https://doi.org/10.1016/j.isci.2019.08.016},

doi = {10.1016/j.isci.2019.08.016},

issn = {2589-0042},

year  = {2019},

date = {2019-09-27},

journal = {iScience},

volume = {19},

pages = {647-661},

publisher = {Elsevier},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Wuerth:18,

title = {NSs protein of sandfly fever Sicilian phlebovirus counteracts interferon (IFN) induction by masking the DNA-binding domain of IFN regulatory factor 3},

author = {Jennifer Deborah Wuerth and Matthias Habjan and Julia Wulle and Giulio Superti-Furga and Andreas Pichlmair and Friedemann Weber},

doi = {10.1128/jvi.01202-18},

year  = {2018},

date = {2018-01-01},

journal = {J Virol},

volume = {92},

issue = {23},

publisher = {American Society for Microbiology},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Hoffmann:14,

title = {A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection.},

author = {Steve Hoffmann and Christian Otto and Gero Doose and Andrea Tanzer and David Langenberger and Sabina Christ and Manfred Kunz and Lesca M Holdt and Daniel Teupser and Jörg Hackermüller and Peter F Stadler},

doi = {10.1186/gb-2014-15-2-r34},

issn = {1474-760X},

year  = {2014},

date = {2014-01-01},

journal = {Genome Biol},

volume = {15},

issue = {2},

pages = {R34},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kainulainen:14,

title = {Virulence factor NSs of Rift Valley fever virus recruits the F-box protein FBXO3 to degrade subunit p62 of general transcription factor TFIIH},

author = {Markus Kainulainen and Matthias Habjan and Philipp Hubel and Laura Busch and Simone Lau and Jacques Colinge and Giulio Superti-Furga and Andreas Pichlmair and Friedemann Weber},

doi = {10.1128/jvi.02914-13},

year  = {2014},

date = {2014-01-01},

journal = {J Virol},

volume = {88},

number = {6},

pages = {3464-3473},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Hoffmann:09,

title = {Fast mapping of short sequences with mismatches, insertions and deletions using index structures.},

author = {Steve Hoffmann and Christian Otto and Stefan Kurtz and Cynthia M Sharma and Philipp Khaitovich and Jörg Vogel and Peter F Stadler and Jörg Hackermüller},

doi = {10.1371/journal.pcbi.1000502},

issn = {1553-7358},

year  = {2009},

date = {2009-01-01},

journal = {PLoS Comput Biol},

volume = {5},

issue = {9},

pages = {e1000502},

keywords = {},

pubstate = {published},

tppubtype = {article}

}