
Joint Publications
2025
Selective activation of dynamics in kinetically frozen supramolecular polymer bottlebrush assemblies. Journal Article
In: Small, vol. 21, iss. 44, pp. e05481, 2025, ISSN: 1613-6829.
Matching drug and polymer for efficient delivery of anti-inflammatory drugs: PLGA, polyesteramides, and acetalated dextran. Journal Article
In: Journal of materials chemistry, 2025, ISSN: 2050-7518.
In: Molecular pharmaceutics, vol. 22, iss. 11, pp. 6803–6815, 2025, ISSN: 1543-8392.
An RNA sponge directs the transition from feast to famine in Caulobacter crescentus. Journal Article
In: Nat Commun, vol. 16, iss. 1, pp. 9478, 2025, ISSN: 2041-1723.
In: Biotechnology Journal, vol. 20, no. 9, 2025, ISSN: 1860-7314.
Unraveling the hierarchical self-assembly of amphiphilic block copolymer-peptide conjugates by tip-enhanced Raman spectroscopy. Journal Article
In: Small, vol. 21, iss. 32, pp. e2502157, 2025, ISSN: 1613-6829.
Mild Oxidation of Plant Polyphenols Yields Modular Nanoparticle-Forming Materials with Drug Loading Capabilities. Journal Article
In: Macromolecular bioscience, vol. 25, iss. 6, pp. e2400529, 2025, ISSN: 1616-5195.
Cholesterol allosteric modulation of the oxytocin receptor. Journal Article
In: Biophysical journal, vol. 124, iss. 12, pp. 1930–1943, 2025, ISSN: 1542-0086.
Crossover operators for molecular graphs with an application to virtual drug screening. Journal Article
In: Journal of cheminformatics, vol. 17, iss. 1, pp. 97, 2025, ISSN: 1758-2946.
Chemical characteristics vectors map the chemical space of natural biomes from untargeted mass spectrometry data. Journal Article
In: Journal of cheminformatics, vol. 17, iss. 1, pp. 82, 2025, ISSN: 1758-2946.
Identification and optimization of a small molecule inhibitor of the ovarian tumor protease of the Crimean-Congo hemorrhagic fever virus. Journal Article
In: Bioorganic & medicinal chemistry, vol. 120, pp. 118093, 2025, ISSN: 1464-3391.
Computational engineering of siderocalin to modulate its binding affinity to the antihypertension drug candesartan. Journal Article
In: Journal of structural biology, vol. 217, iss. 1, pp. 108180, 2025, ISSN: 1095-8657.
Deciphering respiratory viral infections by harnessing organ-on-chip technology to explore the gut-lung axis. Journal Article
In: Open biology, vol. 15, iss. 3, pp. 240231, 2025, ISSN: 2046-2441.
AnchoRNA: Full virus genome alignments through conserved anchor regions Technical Report
Uni Jena 2025, (submitted).
Self-supervised machine learning methods for protein design improve sampling but not the identification of high-fitness variants. Journal Article
In: Science advances, vol. 11, iss. 7, pp. eadr7338, 2025, ISSN: 2375-2548.
diffONT: Predicting methylation-specific PCR biomarkers based on nanopore sequencing data for clinical application Journal Article
In: BioRXiv, 2025.
Surface-enhanced Raman spectroscopy: a half-century historical perspective. Journal Article
In: Chemical Society reviews, vol. 54, iss. 3, pp. 1453–1551, 2025, ISSN: 1460-4744.
VirJenDB: A FAIR (meta)data and analysis platform for all viruses Journal Article
In: Nucleic Acids Res, 2025.
In: PLoS One, vol. 20, iss. 7, pp. e0329115, 2025, ISSN: 1932-6203.
Analysis of microRNA expression reveals convergent evolution of the molecular control of diapause in annual killifishes. Journal Article
In: Frontiers in genetics, vol. 16, pp. 1583989, 2025, ISSN: 1664-8021.
Dynamont: A Comprehensive Cross-Species Comparison of ONT Segmentation Tools Journal Article
In: submitted to GigaScience, 2025.
Persistence, spillover, and evolution of co-occurring lineages of lymphocytic choriomeningitis virus. Journal Article
In: Virus Evol, vol. 11, iss. 1, pp. veaf085, 2025, ISSN: 2057-1577.
High-fat diet impairs microbial metabolite production and aggravates influenza~A infection Journal Article
In: Cell Communication and Signaling, vol. 23, no. 1, pp. 359, 2025, ISSN: 1478-811X.
2024
HyperMPNN-A general strategy to design thermostable proteins learned from hyperthermophiles. Journal Article
In: BioRXiv, 2024, ISSN: 2692-8205.
Engineering extracellular vesicles to transiently permeabilize the blood-brain barrier. Journal Article
In: Journal of nanobiotechnology, vol. 22, iss. 1, pp. 747, 2024, ISSN: 1477-3155.
Strategies of rational and structure-driven vaccine design for emphArenaviruses Journal Article
In: Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, vol. 123, pp. 105626, 2024, ISSN: 1567-7257.
Comprehensive survey of conserved RNA secondary structures in full-genome alignment of hepatitis C virus Journal Article
In: Sci Rep, vol. 14, iss. 1, pp. 15145, 2024, ISSN: 2045-2322.
Evaluation of SARS-CoV-2-Specific IgY Antibodies: Production, Reactivity, and Neutralizing Capability against Virus Variants. Journal Article
In: Int J Mol Sci, vol. 25, iss. 14, 2024, ISSN: 1422-0067.
Raman-Activated, Interactive Sorting of Isotope-Labeled Bacteria. Journal Article
In: Sensors (Basel, Switzerland), vol. 24, iss. 14, 2024, ISSN: 1424-8220.
In: Viruses, vol. 16, no. 8, pp. 1210, 2024.
Importations of SARS-CoV-2 lineages decline after nonpharmaceutical interventions in phylogeographic analyses Journal Article
In: Nat Commun, vol. 15, no. 1, pp. 5267, 2024.
Backbone chemical shift and secondary structure assignments for mouse siderocalin Journal Article
In: Biomol NMR Assign, vol. 18, iss. 1, no. 1, pp. 79–84, 2024, ISSN: 1874-270X.
Selective uptake into inflamed human intestinal tissue and immune cell targeting by wormlike polymer micelles Journal Article
In: Small, vol. 20, no. 21, pp. e2306482, 2024.
Combining Rosetta sequence design with protein language model predictions using evolutionary scale modeling (ESM) as restraint. Journal Article
In: ACS synthetic biology, vol. 13, iss. 4, no. 4, pp. 1085–1092, 2024, ISSN: 2161-5063.
Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain Journal Article
In: Nucleic Acids Res, vol. 52, no. 6, pp. 2865–2885, 2024.
Genome-wide profiling of Hfq-bound RNAs reveals the iron-responsive small RNA RusT in emphCaulobacter crescentus Journal Article
In: mBio, vol. 15, no. 4, pp. e0315323, 2024.
Combining machine learning with structure-based protein design to predict and engineer post-translational modifications of proteins. Journal Article
In: PLoS Comput Biol, vol. 20, iss. 3, no. 3, pp. e1011939, 2024, ISSN: 1553-7358.
Nanobody-mediated neutralization of candidalysin prevents epithelial damage and inflammatory responses that drive vulvovaginal candidiasis pathogenesis Journal Article
In: mBio, vol. 15, no. 3, pp. e0340923, 2024.
The global RNA–RNA interactome of emphKlebsiella pneumoniae unveils a small RNA regulator of cell division Journal Article
In: Proc Natl Acad Sci, vol. 121, iss. 9, no. 9, pp. e2317322121, 2024, ISSN: 1091-6490.
Influenza~A virus selectively elevates prostaglandin E2 formation in pro-resolving macrophages Journal Article
In: iScience, vol. 27, iss. 1, no. 1, pp. 108775, 2024, ISSN: 2589-0042.
Organ-on-chip models for infectious disease research. Journal Article
In: Nat Microbiol, vol. 9, iss. 4, pp. 891–904, 2024, ISSN: 2058-5276.
MicrobioRaman: An open-access web repository for microbiological Raman spectroscopy data. Journal Article
In: Nat Microbiol, vol. 9, iss. 5, pp. 1152–1156, 2024, ISSN: 2058-5276.
PAPAS promotes differentiation of mammary epithelial cells and suppresses breast carcinogenesis Journal Article
In: Cell Rep, vol. 43, no. 1, pp. 113644, 2024.
emphAspergillus fumigatus-derived gliotoxin impacts innate immune cell activation through modulating lipid mediator production in macrophages Journal Article
In: Immunology, vol. 173, no. 4, pp. 748–767, 2024.
PEG-Lipid-PLGA Hybrid Particles for Targeted Delivery of Anti-Inflammatory Drugs. Journal Article
In: Pharmaceutics, vol. 16, iss. 2, 2024, ISSN: 1999-4923.
2023
Ethoxy acetalated dextran nanoparticles for drug delivery: A comparative study of formulation methods. Journal Article
In: International journal of pharmaceutics: X, vol. 5, pp. 100173, 2023, ISSN: 2590-1567.
Importations of SARS-CoV-2 lineages decline after nonpharmaceutical interventions in phylogeographic analyses Journal Article
In: medRxiv, 2023.
Contribution of radixin and ezrin to the maintenance of hepatocytes' excretory function in health and disease Journal Article
In: Heliyon, vol. 9, no. 11, pp. e21009, 2023.
Quantitative analysis of peroxisome tracks using a Hidden Markov Model Journal Article
In: Sci Rep, vol. 13, no. 1, pp. 19694, 2023.
In: J Virol, vol. 97, iss. 10, pp. e0020523, 2023, ISSN: 1098-5514.
