Joint Publications
310 entries « 1 of 7 »

2025

Ulrich, Ziliang Zhao Tobias Klein Hans F.

Selective activation of dynamics in kinetically frozen supramolecular polymer bottlebrush assemblies. Journal Article

In: Small, vol. 21, iss. 44, pp. e05481, 2025, ISSN: 1613-6829.

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Klepsch, Mira Behnke Philipp Dahlke Lea C.

Matching drug and polymer for efficient delivery of anti-inflammatory drugs: PLGA, polyesteramides, and acetalated dextran. Journal Article

In: Journal of materials chemistry, 2025, ISSN: 2050-7518.

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Dahlke, Lea C. Klepsch Paul M. Jordan Philipp

Enhanced efficiency of the microsomal prostaglandin E$_2$ synthase-1 inhibitor AGU661 in human whole blood by encapsulation into PLGA-based nanoparticles Journal Article

In: Molecular pharmaceutics, vol. 22, iss. 11, pp. 6803–6815, 2025, ISSN: 1543-8392.

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Vogt, Malte Siemers Manuel Velasco Gomariz Laura N.

An RNA sponge directs the transition from feast to famine in Caulobacter crescentus. Journal Article

In: Nat Commun, vol. 16, iss. 1, pp. 9478, 2025, ISSN: 2041-1723.

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Ramoji, Oleg Ryabchykov Philipp Baumbach Anuradha

Raman spectroscopy can identify acute and persistent biochemical changes in leukocytes from patients with COVID‐19 and non‐COVID‐19‐associated sepsis Journal Article

In: Biotechnology Journal, vol. 20, no. 9, 2025, ISSN: 1860-7314.

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Höppener, Stephanie Höppener Fabian H. Sobotta Christiane

Unraveling the hierarchical self-assembly of amphiphilic block copolymer-peptide conjugates by tip-enhanced Raman spectroscopy. Journal Article

In: Small, vol. 21, iss. 32, pp. e2502157, 2025, ISSN: 1613-6829.

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Sunoqrot, Ilya Anufriev Samah Abusulieh Suhair

Mild Oxidation of Plant Polyphenols Yields Modular Nanoparticle-Forming Materials with Drug Loading Capabilities. Journal Article

In: Macromolecular bioscience, vol. 25, iss. 6, pp. e2400529, 2025, ISSN: 1616-5195.

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Marlow, Georg Kuenze Alexander Vogel Brennica

Cholesterol allosteric modulation of the oxytocin receptor. Journal Article

In: Biophysical journal, vol. 124, iss. 12, pp. 1930–1943, 2025, ISSN: 1542-0086.

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Domschke, Thomas Gatter Bruno J. Schmidt Nico

Crossover operators for molecular graphs with an application to virtual drug screening. Journal Article

In: Journal of cheminformatics, vol. 17, iss. 1, pp. 97, 2025, ISSN: 1758-2946.

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Peets, Kai Dührkop Aristeidis Litos Pilleriin

Chemical characteristics vectors map the chemical space of natural biomes from untargeted mass spectrometry data. Journal Article

In: Journal of cheminformatics, vol. 17, iss. 1, pp. 82, 2025, ISSN: 1758-2946.

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Beckmann, Maik Icker Fabian Liessmann Lorenz

Identification and optimization of a small molecule inhibitor of the ovarian tumor protease of the Crimean-Congo hemorrhagic fever virus. Journal Article

In: Bioorganic & medicinal chemistry, vol. 120, pp. 118093, 2025, ISSN: 1464-3391.

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Vogel, Nina G Bozhanova Johanna Moeller Kristina

Computational engineering of siderocalin to modulate its binding affinity to the antihypertension drug candesartan. Journal Article

In: Journal of structural biology, vol. 217, iss. 1, pp. 108180, 2025, ISSN: 1095-8657.

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Koceva, Parastoo Akbarimoghaddam Mona Amiratashani Hristina

Deciphering respiratory viral infections by harnessing organ-on-chip technology to explore the gut-lung axis. Journal Article

In: Open biology, vol. 15, iss. 3, pp. 240231, 2025, ISSN: 2046-2441.

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Eulenfeld, Peter F. Stadler Sandra Tribel Tom

AnchoRNA: Full virus genome alignments through conserved anchor regions Technical Report

Uni Jena 2025, (submitted).

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Ertelt, Jens Meiler Rocco Moretti Moritz

Self-supervised machine learning methods for protein design improve sampling but not the identification of high-fitness variants. Journal Article

In: Science advances, vol. 11, iss. 7, pp. eadr7338, 2025, ISSN: 2375-2548.

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Meyer, Laura Wiehle Emanuel Barth Daria

diffONT: Predicting methylation-specific PCR biomarkers based on nanopore sequencing data for clinical application Journal Article

In: BioRXiv, 2025.

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Yi, Ren Hu En-Ming You Jun

Surface-enhanced Raman spectroscopy: a half-century historical perspective. Journal Article

In: Chemical Society reviews, vol. 54, iss. 3, pp. 1453–1551, 2025, ISSN: 1460-4744.

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Saghaei, Kilian Ossetek Malte Siemers Shahram

VirJenDB: A FAIR (meta)data and analysis platform for all viruses Journal Article

In: Nucleic Acids Res, 2025.

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Zulfiqar, Emanuel Barth Anne-Susann Abel Mahnoor

Analysis of metabolomics and transcriptomics data to assess interactions in microalgal co-culture of Skeletonema marinoi and emphPrymnesium parvum Journal Article

In: PLoS One, vol. 20, iss. 7, pp. e0329115, 2025, ISSN: 1932-6203.

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Barth, Luca Dolfi Mario Baumgart Emanuel

Analysis of microRNA expression reveals convergent evolution of the molecular control of diapause in annual killifishes. Journal Article

In: Frontiers in genetics, vol. 16, pp. 1583989, 2025, ISSN: 1664-8021.

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zu Siederdissen Jannes Spangenberg, Winfried Goettsch Christian Höner

Dynamont: A Comprehensive Cross-Species Comparison of ONT Segmentation Tools Journal Article

In: submitted to GigaScience, 2025.

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Mehl, Fiona Joana Möhrer Olayide Abraham Adeyemi Calvin

Persistence, spillover, and evolution of co-occurring lineages of lymphocytic choriomeningitis virus. Journal Article

In: Virus Evol, vol. 11, iss. 1, pp. veaf085, 2025, ISSN: 2057-1577.

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Hornung, Laura Klement Harini K. SureshKumar Franziska

High-fat diet impairs microbial metabolite production and aggravates influenza~A infection Journal Article

In: Cell Communication and Signaling, vol. 23, no. 1, pp. 359, 2025, ISSN: 1478-811X.

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2024

Ertelt, Max Beining Phillip Schlegel Moritz

HyperMPNN-A general strategy to design thermostable proteins learned from hyperthermophiles. Journal Article

In: BioRXiv, 2024, ISSN: 2692-8205.

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Tomatis, Susana Simões Susana Rosa Francesca

Engineering extracellular vesicles to transiently permeabilize the blood-brain barrier. Journal Article

In: Journal of nanobiotechnology, vol. 22, iss. 1, pp. 747, 2024, ISSN: 1477-3155.

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Peter, Johannes Klier Dieter S Hoffmann Antonia Sophia

Strategies of rational and structure-driven vaccine design for emphArenaviruses Journal Article

In: Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, vol. 123, pp. 105626, 2024, ISSN: 1567-7257.

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Triebel, Nancy Ontiveros Kevin Lamkiewicz Sandra

Comprehensive survey of conserved RNA secondary structures in full-genome alignment of hepatitis C virus Journal Article

In: Sci Rep, vol. 14, iss. 1, pp. 15145, 2024, ISSN: 2045-2322.

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Schön, Nico Joël Halwe Andrea Aebischer Jacob

Evaluation of SARS-CoV-2-Specific IgY Antibodies: Production, Reactivity, and Neutralizing Capability against Virus Variants. Journal Article

In: Int J Mol Sci, vol. 25, iss. 14, 2024, ISSN: 1422-0067.

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Razi, Thomas Henkel Nicolae Tarcea Sepehr

Raman-Activated, Interactive Sorting of Isotope-Labeled Bacteria. Journal Article

In: Sensors (Basel, Switzerland), vol. 24, iss. 14, 2024, ISSN: 1424-8220.

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Ritsch, Kevin Lamkiewicz Tom Eulenfeld Muriel

Endogenous Bornavirus-like elements in bats: Evolutionary insights from the conserved riboviral L-gene in microbats and its antisense transcription in emphMyotis daubentonii Journal Article

In: Viruses, vol. 16, no. 8, pp. 1210, 2024.

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Goliaei, Aideen Roddy Mohammad-Hadi Foroughmand-Araabi Sama

Importations of SARS-CoV-2 lineages decline after nonpharmaceutical interventions in phylogeographic analyses Journal Article

In: Nat Commun, vol. 15, no. 1, pp. 5267, 2024.

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Moeller, Markus Voehler Nina G. Bozhanova Johanna

Backbone chemical shift and secondary structure assignments for mouse siderocalin Journal Article

In: Biomol NMR Assign, vol. 18, iss. 1, no. 1, pp. 79–84, 2024, ISSN: 1874-270X.

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Gardey, Fabian H Sobotta Zoltan Cseresnyes Elena

Selective uptake into inflamed human intestinal tissue and immune cell targeting by wormlike polymer micelles Journal Article

In: Small, vol. 20, no. 21, pp. e2306482, 2024.

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Ertelt, Clara T Schoeder Jens Meiler Moritz

Combining Rosetta sequence design with protein language model predictions using evolutionary scale modeling (ESM) as restraint. Journal Article

In: ACS synthetic biology, vol. 13, iss. 4, no. 4, pp. 1085–1092, 2024, ISSN: 2161-5063.

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Kumar, Emanuel Barth Verena Kluever Nisha Hemandhar

Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain Journal Article

In: Nucleic Acids Res, vol. 52, no. 6, pp. 2865–2885, 2024.

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Vogt, Anna Schäpers Gaël Panis Laura N

Genome-wide profiling of Hfq-bound RNAs reveals the iron-responsive small RNA RusT in emphCaulobacter crescentus Journal Article

In: mBio, vol. 15, no. 4, pp. e0315323, 2024.

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Ertelt, Jack B Maguire Vikram Khipple Mulligan Moritz

Combining machine learning with structure-based protein design to predict and engineer post-translational modifications of proteins. Journal Article

In: PLoS Comput Biol, vol. 20, iss. 3, no. 3, pp. e1011939, 2024, ISSN: 1553-7358.

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Valentine, Axel Dietschmann Paul Rudolph Marisa

Nanobody-mediated neutralization of candidalysin prevents epithelial damage and inflammatory responses that drive vulvovaginal candidiasis pathogenesis Journal Article

In: mBio, vol. 15, no. 3, pp. e0340923, 2024.

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Ruhland, Ruman Gerst Malte Siemers Eric

The global RNA–RNA interactome of emphKlebsiella pneumoniae unveils a small RNA regulator of cell division Journal Article

In: Proc Natl Acad Sci, vol. 121, iss. 9, no. 9, pp. e2317322121, 2024, ISSN: 1091-6490.

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Jordan, Vivien Nischang Kerstin Günther Paul M

Influenza~A virus selectively elevates prostaglandin E2 formation in pro-resolving macrophages Journal Article

In: iScience, vol. 27, iss. 1, no. 1, pp. 108775, 2024, ISSN: 2589-0042.

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Alonso-Roman, Marc Thilo Figge Alexander S Mosig Raquel

Organ-on-chip models for infectious disease research. Journal Article

In: Nat Microbiol, vol. 9, iss. 4, pp. 891–904, 2024, ISSN: 2058-5276.

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Lee, Awais Athar Zachary Landry Kang Soo

MicrobioRaman: An open-access web repository for microbiological Raman spectroscopy data. Journal Article

In: Nat Microbiol, vol. 9, iss. 5, pp. 1152–1156, 2024, ISSN: 2058-5276.

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Ren, Viviane Schnell Feng Bai Sijia

PAPAS promotes differentiation of mammary epithelial cells and suppresses breast carcinogenesis Journal Article

In: Cell Rep, vol. 43, no. 1, pp. 113644, 2024.

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Günther, Zoltan Cseresnyés Vivien Nischang Kerstin

emphAspergillus fumigatus-derived gliotoxin impacts innate immune cell activation through modulating lipid mediator production in macrophages Journal Article

In: Immunology, vol. 173, no. 4, pp. 748–767, 2024.

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Ismail, Philipp Dahlke Lea C. Klepsch Jana

PEG-Lipid-PLGA Hybrid Particles for Targeted Delivery of Anti-Inflammatory Drugs. Journal Article

In: Pharmaceutics, vol. 16, iss. 2, 2024, ISSN: 1999-4923.

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2023

Behnke, Philipp Dahlke Paul Klemm Mira

Ethoxy acetalated dextran nanoparticles for drug delivery: A comparative study of formulation methods. Journal Article

In: International journal of pharmaceutics: X, vol. 5, pp. 100173, 2023, ISSN: 2590-1567.

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Goliaei, A. Roddy M. H. Foroughmand-Araabi S.

Importations of SARS-CoV-2 lineages decline after nonpharmaceutical interventions in phylogeographic analyses Journal Article

In: medRxiv, 2023.

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Dellbrügge, Anna Medyukhina Lena D Jesse Friederike

Contribution of radixin and ezrin to the maintenance of hepatocytes' excretory function in health and disease Journal Article

In: Heliyon, vol. 9, no. 11, pp. e21009, 2023.

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Svensson, Wolfgang Schliebs Katharina Reglinski Carl-Magnus

Quantitative analysis of peroxisome tracks using a Hidden Markov Model Journal Article

In: Sci Rep, vol. 13, no. 1, pp. 19694, 2023.

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Schoen, Marcel A Müller Martin Hölzer Andreas

Functional comparisons of the virus sensor RIG-I from humans, the microbat emphMyotis daubentonii, and the megabat emphRousettus aegyptiacus, and their response to SARS-CoV-2 infection. Journal Article

In: J Virol, vol. 97, iss. 10, pp. e0020523, 2023, ISSN: 1098-5514.

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310 entries « 1 of 7 »